Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ZFYVE27Protrudin. (408 aa)    
Predicted Functional Partners:
VAPA
Vesicle-associated membrane protein-associated protein A.
    
 
 0.873
VAPB
Vesicle-associated membrane protein-associated protein B.
    
 
 0.743
ATP5F1A
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.718
REEP1
Receptor expression-enhancing protein.
    
 
 0.715
PDZD8
PDZ domain-containing protein 8.
    
 
 0.684
ALDH18A1
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
      
 0.673
WASHC5
WASH complex subunit strumpellin.
      
 0.666
STARD3-2
StAR-related lipid transfer protein 3.
   
  
 0.618
STARD3
StAR-related lipid transfer protein 3.
   
  
 0.618
MOSPD1
Motile sperm domain-containing protein 1.
    
 
 0.595
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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