STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH15Cadherin 15. (861 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1.
   
 0.782
CTNND1
Catenin delta-1.
    
 0.687
ARVCF
Armadillo repeat protein deleted in velo-cardio-facial syndrome.
    
 0.687
JUP
Junction plakoglobin.
   
 0.676
CTNND2
Catenin delta-2.
    
 0.502
LOC110469820
Catenin delta-2-like.
    
 0.502
PKP4
Plakophilin-4.
    
 0.502
CDC42
Cell division control protein 42.
    
 0.499
CTNNA2-2
Catenin alpha-2 isoform X1.
    
 0.471
CTNNA1
Catenin alpha-1.
    
 0.471
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.