Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CRTAC1Cartilage acidic protein 1. (704 aa)    
Predicted Functional Partners:
MAPRE3
Microtubule-associated protein RP/EB family member 3-like.
    
   0.716
MAPRE2
Microtubule-associated protein RP/EB family member 2.
    
   0.716
GPLD1
Phosphatidylinositol-glycan-specific phospholipase D.
    
 
 0.677
LOC110483671
Leucine-rich repeat and fibronectin type III domain-containing protein 1-like protein.
      
 0.585
CENPU
Centromere protein U.
      
 0.561
WDR78
WD repeat domain 78.
      
 0.543
CLDN19
Claudin 19.
      
 0.535
VSTM2B
V-set and transmembrane domain-containing protein 2B.
   
  
 0.524
MAPRE1
Microtubule-associated protein RP/EB family member 1.
    
   0.510
CCDC137
Coiled-coil domain-containing protein 137.
      
 0.470
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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