ACSF3 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ACSF3

Acyl-CoA synthetase family member 3, mitochondrial. (375 aa)

Predicted Functional Partners:

FASN

0.962

ENSLSDP00000007344

0.939

ALDH2

0.937

ALDH9A1

0.937

MCAT

0.936

ALDH7A1

0.932

AOX1

0.918

LOC110483906

0.917

LOC110471426

0.917

ACACB

0.916

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACACB	ACSF3	ENSLSDP00000016900	ENSLSDP00000007349	Acetyl-CoA carboxylase 2.	Acyl-CoA synthetase family member 3, mitochondrial.	0.916
ACACB	FASN	ENSLSDP00000016900	ENSLSDP00000003597	Acetyl-CoA carboxylase 2.	Fatty acid synthase.	0.968
ACACB	MCAT	ENSLSDP00000016900	ENSLSDP00000006129	Acetyl-CoA carboxylase 2.	Malonyl-CoA-acyl carrier protein transacylase, mitochondrial.	0.966
ACSF3	ACACB	ENSLSDP00000007349	ENSLSDP00000016900	Acyl-CoA synthetase family member 3, mitochondrial.	Acetyl-CoA carboxylase 2.	0.916
ACSF3	ALDH2	ENSLSDP00000007349	ENSLSDP00000006497	Acyl-CoA synthetase family member 3, mitochondrial.	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	0.937
ACSF3	ALDH7A1	ENSLSDP00000007349	ENSLSDP00000013500	Acyl-CoA synthetase family member 3, mitochondrial.	Alpha-aminoadipic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.932
ACSF3	ALDH9A1	ENSLSDP00000007349	ENSLSDP00000013168	Acyl-CoA synthetase family member 3, mitochondrial.	4-trimethylaminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.937
ACSF3	AOX1	ENSLSDP00000007349	ENSLSDP00000000654	Acyl-CoA synthetase family member 3, mitochondrial.	Aldehyde oxidase.	0.918
ACSF3	ENSLSDP00000007344	ENSLSDP00000007349	ENSLSDP00000007344	Acyl-CoA synthetase family member 3, mitochondrial.	annotation not available	0.939
ACSF3	FASN	ENSLSDP00000007349	ENSLSDP00000003597	Acyl-CoA synthetase family member 3, mitochondrial.	Fatty acid synthase.	0.962
ACSF3	LOC110471426	ENSLSDP00000007349	ENSLSDP00000021722	Acyl-CoA synthetase family member 3, mitochondrial.	Methylmalonyl-CoA epimerase, mitochondrial.	0.917
ACSF3	LOC110483906	ENSLSDP00000007349	ENSLSDP00000000808	Acyl-CoA synthetase family member 3, mitochondrial.	Methylmalonyl-CoA epimerase, mitochondrial.	0.917
ACSF3	MCAT	ENSLSDP00000007349	ENSLSDP00000006129	Acyl-CoA synthetase family member 3, mitochondrial.	Malonyl-CoA-acyl carrier protein transacylase, mitochondrial.	0.936
ALDH2	ACSF3	ENSLSDP00000006497	ENSLSDP00000007349	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	Acyl-CoA synthetase family member 3, mitochondrial.	0.937
ALDH2	ALDH7A1	ENSLSDP00000006497	ENSLSDP00000013500	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	Alpha-aminoadipic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.919
ALDH2	ALDH9A1	ENSLSDP00000006497	ENSLSDP00000013168	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	4-trimethylaminobutyraldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.910
ALDH2	AOX1	ENSLSDP00000006497	ENSLSDP00000000654	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	Aldehyde oxidase.	0.913
ALDH2	ENSLSDP00000007344	ENSLSDP00000006497	ENSLSDP00000007344	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	annotation not available	0.403
ALDH7A1	ACSF3	ENSLSDP00000013500	ENSLSDP00000007349	Alpha-aminoadipic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Acyl-CoA synthetase family member 3, mitochondrial.	0.932
ALDH7A1	ALDH2	ENSLSDP00000013500	ENSLSDP00000006497	Alpha-aminoadipic semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Aldehyde dehydrogenase, mitochondrial; Belongs to the aldehyde dehydrogenase family.	0.919