STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLSDP00000007379annotation not available (175 aa)    
Predicted Functional Partners:
IRF6
Interferon regulatory factor 6.
 
 
   0.935
RAD51D
DNA repair protein RAD51 4.
      
 0.569
RIPK4
Receptor-interacting serine/threonine-protein kinase 4.
   
 0.532
MYD88
Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.
   
 0.529
ATRX
Transcriptional regulator ATRX.
    
 0.510
MKX
Homeobox protein Mohawk.
    
 
 0.463
DSCC1
Sister chromatid cohesion protein DCC1.
    
 
 0.462
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.449
SIRT1
NAD-dependent protein deacetylase sirtuin-1.
    
 0.416
MAVS
Mitochondrial antiviral-signaling protein.
    
 0.413
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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