Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110476541PH-interacting protein. (768 aa)    
Predicted Functional Partners:
DDB1
DNA damage-binding protein 1.
    
 
 0.669
MYSM1
Histone H2A deubiquitinase MYSM1.
   
 0.613
UBXN7
UBX domain-containing protein 7.
   
 0.607
OFD1
Oral-facial-digital syndrome 1 protein.
    
 
 0.552
PSMG2
Proteasome assembly chaperone 2; Chaperone protein which promotes assembly of the 20S proteasome as part of a heterodimer with PSMG1. Belongs to the PSMG2 family.
     
 0.530
SMARCA4
Transcription activator BRG1.
   
 0.511
SMARCA4-2
Transcription activator BRG1.
   
 0.511
SMARCA2
Putative global transcription activator SNF2L2.
   
 0.511
TAF1
Transcription initiation factor TFIID subunit.
   
 0.507
KIF7
Kinesin-like protein KIF7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.496
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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