STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE65Retinoid isomerohydrolase. (533 aa)    
Predicted Functional Partners:
LRAT
Lecithin retinol acyltransferase.
     
 0.950
RDH10
Retinol dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.927
RDH5
Retinol dehydrogenase 7; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.912
PNPLA4
Patatin-like phospholipase domain-containing protein 4.
     
 0.911
CCNB2
G2/mitotic-specific cyclin-B2; Belongs to the cyclin family.
   
  
 0.689
ANLN
Actin-binding protein anillin.
   
 
 0.587
ALDH18A1
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
      
 0.577
MYO9B
Unconventional myosin-IXb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.576
MYO9A
Unconventional myosin-IXa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.576
ARHGAP11A
Rho GTPase-activating protein 11A.
   
 
 0.543
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.