Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LCA5Lebercilin. (684 aa)    
Predicted Functional Partners:
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.887
TRAPPC4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.867
TRAPPC6B
Trafficking protein particle complex subunit 6B.
   
 0.864
TRAPPC1
Trafficking protein particle complex 1.
   
 0.861
TRAPPC2L
Trafficking protein particle complex subunit 2-like protein.
   
 0.861
TRAPPC9
Trafficking protein particle complex subunit 9.
    
 0.860
TRAPPC2
Trafficking protein particle complex subunit 2.
    
 0.860
TRAPPC8
Trafficking protein particle complex subunit 8.
    
 0.860
TRAPPC10
Trafficking protein particle complex subunit 10.
    
 0.859
TRAPPC11
Trafficking protein particle complex subunit 11.
    
 0.829
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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