Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TMEM88BTransmembrane protein 88. (154 aa)    
Predicted Functional Partners:
TMEM94
Uncharacterized protein KIAA0195.
      
 0.684
MLYCD
Malonyl-CoA decarboxylase, mitochondrial.
    
   0.586
TMEM25
Transmembrane protein 25.
      
 0.547
TMEM170B
Transmembrane protein 170B.
      
 0.444
MYL3
Myosin light chain 1, cardiac muscle.
      
 0.438
MYL4
Myosin light chain, embryonic.
      
 0.438
NKX2-5
Homeobox protein Nkx-2.5.
      
 0.428
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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