Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SSU72RNA polymerase II subunit A C-terminal domain phosphatase SSU72. (194 aa)    
Predicted Functional Partners:
WDR33
Pre-mRNA 3' end processing protein WDR33.
    
 0.970
WDR82
WD repeat-containing protein 82.
   
 0.964
CPSF4
Cleavage and polyadenylation specificity factor subunit 4.
   
 0.957
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.956
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.947
PPP1CA
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.918
PPP1CC
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.918
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.917
GTF2B
Transcription initiation factor IIB.
   
 0.907
FIP1L1
Pre-mRNA 3'-end-processing factor FIP1.
    
 0.903
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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