STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SSU72RNA polymerase II subunit A C-terminal domain phosphatase SSU72. (194 aa)    
Predicted Functional Partners:
WDR82
WD repeat-containing protein 82.
   
 0.988
WDR33
Pre-mRNA 3' end processing protein WDR33.
    
 0.985
CPSF4
Cleavage and polyadenylation specificity factor subunit 4.
   
 0.983
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.981
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.980
SYMPK
Symplekin.
   
 
 0.936
PPP1CA
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.929
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
   
 
 0.928
FIP1L1
Pre-mRNA 3'-end-processing factor FIP1.
    
 0.928
PPP1CB
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.928
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.