Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LARP1BLa-related protein 1B. (1002 aa)    
Predicted Functional Partners:
LARP1
La-related protein 1.
   
   0.924
KIF2A
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
   0.716
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 
 0.698
DKC1
H/ACA ribonucleoprotein complex subunit 4.
   
 
 0.682
RPS3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.660
RRP12
RRP12-like protein.
   
  
 0.608
PACC1
Transmembrane protein 206.
      
 0.600
EDRF1
Erythroid differentiation-related factor 1.
      
 0.599
JADE1
Protein Jade-1.
      
 0.590
NCBP1
Nuclear cap-binding protein subunit 1.
    
 
 0.589
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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