Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110471805Ubiquitin. (77 aa)    
Predicted Functional Partners:
ENSLSDP00000008068
annotation not available
   
 0.998
RPL11
60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 0.991
RPL24
60S ribosomal protein L24.
   
 0.991
RPL34
60S ribosomal protein L34.
   
 0.991
RPL36
60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.
   
 0.991
RPL19
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.990
RPL18
Large subunit ribosomal protein L18e.
  
 0.990
RPL23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 0.989
RPL21
60S ribosomal protein L21.
   
 0.989
RPS6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.989
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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