Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP23BMatrix metalloproteinase-23. (415 aa)    
Predicted Functional Partners:
LOC110470319
Cyclin-dependent kinase 11B.
      
 0.631
CAPN7
Calpain-7; Belongs to the peptidase C2 family.
      
 0.541
TIMP2
Metalloproteinase inhibitor 2.
   
 0.483
TIMP4
Metalloproteinase inhibitor 4.
    
 0.470
SPP1
Osteopontin.
    
 0.462
PARD6A
Partitioning defective 6 alpha.
      
 0.457
CDK13
Cyclin-dependent kinase 13.
      
 0.444
CDK12
Cyclin-dependent kinase 12.
      
 0.444
ATOH8
Protein atonal 8.
      
 0.442
TIMP3
Metalloproteinase inhibitor 3.
   
 0.433
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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