Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABCC6Multidrug resistance-associated protein 6. (1436 aa)    
Predicted Functional Partners:
ABCG2
ATP-binding cassette sub-family G member 2.
   
 0.583
LOC110475029
ATP-binding cassette sub-family G member 2.
   
 0.583
SERPINF2
Alpha-2-antiplasmin; Belongs to the serpin family.
   
  
 0.542
PDGFD
Platelet-derived growth factor D.
      
 0.540
GGCX
Vitamin K-dependent gamma-carboxylase.
   
 
 0.539
LOC110475559
Nodal modulator 1.
      
 0.527
ACOX3
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 
 0.515
PDZK1
Na(+)/H(+) exchange regulatory cofactor NHE-RF3.
    
 0.492
DERL1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 0.489
UBE2V1
Ubiquitin-conjugating enzyme E2 variant 1.
     
  0.473
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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