Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SSR4Translocon-associated protein subunit delta. (146 aa)    
Predicted Functional Partners:
SSR3
Translocon-associated protein subunit gamma.
   
 0.999
SSR1
Translocon-associated protein subunit alpha.
   
 0.998
LOC110471594
Translocon-associated protein subunit beta; TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.
   
 0.996
LOC110484123
Translocon-associated protein subunit beta; TRAP proteins are part of a complex whose function is to bind calcium to the ER membrane and thereby regulate the retention of ER resident proteins.
   
 0.996
SEC61B
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
   
 0.991
LOC110471592
Translocon-associated protein subunit beta-like.
   
 0.968
SEC61G
Protein transport protein Sec61 subunit gamma.
   
 0.924
RPL8
60S ribosomal protein L8.
   
   0.924
SEC61A2
Protein transport protein Sec61 subunit alpha isoform 2.
   
 0.908
SEC61A1
Protein transport protein Sec61 subunit alpha isoform 1.
   
 0.908
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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