Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110478803Histone H3; Belongs to the histone H3 family. (136 aa)    
Predicted Functional Partners:
KDM6A
Lysine-specific demethylase 6A.
   
 0.805
KDM6B
Lysine-specific demethylase 6B.
   
 0.805
SETD2
Histone-lysine N-methyltransferase SETD2.
    
 0.747
ENSLSDP00000010591
annotation not available
    
 0.737
DOT1L
Histone-lysine N-methyltransferase, H3 lysine-79 specific.
   
 0.724
ARID4A
AT-rich interactive domain-containing protein 4A.
   
 0.723
ARID4B
AT-rich interactive domain-containing protein 4B.
   
 0.723
SYCP3
Synaptonemal complex protein 3.
    
 0.721
UBA52
Ubiquitin-60S ribosomal protein L40.
   
  0.719
LOC110483171
Histone H2B; Belongs to the histone H2B family.
 
 
 0.710
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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