Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CYBACytochrome b-245 light chain. (182 aa)    
Predicted Functional Partners:
NCF1
Neutrophil cytosol factor 1.
   
 0.999
NOXO1
NADPH oxidase organizer 1.
    
 0.994
NCF4
Neutrophil cytosol factor 4.
   
 0.990
CYBB
Cytochrome b-245 heavy chain.
   
 0.989
NOX4
NADPH oxidase 4.
   
 0.980
NOX5
NADPH oxidase 5.
   
 0.948
NCF2
Neutrophil cytosol factor 2.
   
 0.940
NCF2_1
Neutrophil cytosol factor 2.
   
 0.940
NOX1
NADPH oxidase 1.
   
 0.865
RAC2
Ras-related C3 botulinum toxin substrate 2.
   
 0.834
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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