Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F5Coagulation factor V; Belongs to the multicopper oxidase family. (1901 aa)    
Predicted Functional Partners:
F2
Prothrombin; Belongs to the peptidase S1 family.
   
 0.992
PROC
Vitamin K-dependent protein C.
   
 0.982
PROS1
Vitamin K-dependent protein S.
   
 0.973
LMAN1
Protein ERGIC-53.
    
 0.808
F13B
Abnormal spindle-like microcephaly-associated.
   
 
 0.775
F10
Coagulation factor X; Belongs to the peptidase S1 family.
   
 0.763
MMRN1
Multimerin-1.
    
 0.722
F9_0
Coagulation factor IX; Belongs to the peptidase S1 family.
   
 0.720
F9
Coagulation factor IX.
   
 0.720
F7
Coagulation factor VII; Belongs to the peptidase S1 family.
   
 0.720
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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