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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEMA7ASemaphorin-7A; Belongs to the semaphorin family. (457 aa)    
Predicted Functional Partners:
PLXNC1
Plexin-C1.
    
 0.986
PLXNA4
Plexin-A4.
    
 0.795
PLXND1
Plexin-D1.
    
 0.765
MET
Hepatocyte growth factor receptor.
    
 0.673
MST1R
Macrophage-stimulating protein receptor.
    
 0.673
MRM1
rRNA methyltransferase 1, mitochondrial.
      
 0.672
ENSLSDP00000017502
annotation not available
      
 0.672
SBNO2
Protein strawberry notch 2.
      
 0.672
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
      
 0.672
PLXNA2
Plexin-A2.
    
 0.660
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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