Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMIM7Small integral membrane protein 7. (75 aa)    
Predicted Functional Partners:
COG2
Conserved oligomeric Golgi complex subunit 2.
   
 0.947
COG7
Conserved oligomeric Golgi complex subunit 7.
   
 0.942
COG3
Conserved oligomeric Golgi complex subunit 3.
   
 0.942
COG8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 0.938
COG6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.937
CASC4
Protein CASC4.
      
 0.874
TM9SF3
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
      
 0.872
LOC110480512
Conserved oligomeric Golgi complex subunit 1.
   
 0.865
ENSLSDP00000005058
annotation not available
   
 0.865
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
     
 0.857
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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