RHOQ protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RHOQ

Rho-related GTP-binding protein RhoQ. (205 aa)

Predicted Functional Partners:

EXOC7

0.961

CRK

0.938

RAPGEF1

0.936

CRKL

0.928

ITSN2

0.846

PAK2

0.797

DOCK8

0.766

ITSN1

0.754

PAK6

0.706

CDC42BPA

0.706

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42BPA	ITSN2	ENSLSDP00000014607	ENSLSDP00000003205	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Intersectin-2.	0.401
CDC42BPA	PAK2	ENSLSDP00000014607	ENSLSDP00000000885	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Non-specific serine/threonine protein kinase.	0.495
CDC42BPA	RHOQ	ENSLSDP00000014607	ENSLSDP00000007738	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	Rho-related GTP-binding protein RhoQ.	0.706
CRK	CRKL	ENSLSDP00000017689	ENSLSDP00000012597	Adapter molecule crk.	Crk-like protein.	0.996
CRK	RAPGEF1	ENSLSDP00000017689	ENSLSDP00000003177	Adapter molecule crk.	Rap guanine nucleotide exchange factor 1.	0.999
CRK	RHOQ	ENSLSDP00000017689	ENSLSDP00000007738	Adapter molecule crk.	Rho-related GTP-binding protein RhoQ.	0.938
CRKL	CRK	ENSLSDP00000012597	ENSLSDP00000017689	Crk-like protein.	Adapter molecule crk.	0.996
CRKL	RAPGEF1	ENSLSDP00000012597	ENSLSDP00000003177	Crk-like protein.	Rap guanine nucleotide exchange factor 1.	0.999
CRKL	RHOQ	ENSLSDP00000012597	ENSLSDP00000007738	Crk-like protein.	Rho-related GTP-binding protein RhoQ.	0.928
DOCK8	RHOQ	ENSLSDP00000019922	ENSLSDP00000007738	Dedicator of cytokinesis protein 8; Belongs to the DOCK family.	Rho-related GTP-binding protein RhoQ.	0.766
EXOC7	RHOQ	ENSLSDP00000008548	ENSLSDP00000007738	Exocyst complex component 7; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Rho-related GTP-binding protein RhoQ.	0.961
ITSN1	ITSN2	ENSLSDP00000012112	ENSLSDP00000003205	Intersectin-1.	Intersectin-2.	0.797
ITSN1	RAPGEF1	ENSLSDP00000012112	ENSLSDP00000003177	Intersectin-1.	Rap guanine nucleotide exchange factor 1.	0.501
ITSN1	RHOQ	ENSLSDP00000012112	ENSLSDP00000007738	Intersectin-1.	Rho-related GTP-binding protein RhoQ.	0.754
ITSN2	CDC42BPA	ENSLSDP00000003205	ENSLSDP00000014607	Intersectin-2.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.401
ITSN2	ITSN1	ENSLSDP00000003205	ENSLSDP00000012112	Intersectin-2.	Intersectin-1.	0.797
ITSN2	PAK2	ENSLSDP00000003205	ENSLSDP00000000885	Intersectin-2.	Non-specific serine/threonine protein kinase.	0.471
ITSN2	PAK6	ENSLSDP00000003205	ENSLSDP00000005661	Intersectin-2.	Non-specific serine/threonine protein kinase.	0.471
ITSN2	RAPGEF1	ENSLSDP00000003205	ENSLSDP00000003177	Intersectin-2.	Rap guanine nucleotide exchange factor 1.	0.622
ITSN2	RHOQ	ENSLSDP00000003205	ENSLSDP00000007738	Intersectin-2.	Rho-related GTP-binding protein RhoQ.	0.846