Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SYNPO2LSynaptopodin 2-like protein. (1084 aa)    
Predicted Functional Partners:
RNF150
RING finger protein 150.
   
  
 0.753
MYOZ1
Myozenin-1.
 
 
  
 0.706
LIAS
Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
   
  
 0.692
SYNM
Synemin; Belongs to the intermediate filament family.
  
  
 0.681
WDTC1
WD and tetratricopeptide repeats protein 1.
    
 
 0.665
ARFIP1
Arfaptin-1.
      
 0.591
ARFIP2
Arfaptin-2.
      
 0.591
RNF130
E3 ubiquitin-protein ligase RNF130.
   
  
 0.570
MAD2L1
Mitotic spindle assembly checkpoint protein MAD2A.
      
 0.566
SMYD1
Histone-lysine N-methyltransferase SMYD1.
   
  
 0.561
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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