Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACKR4Atypical chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family. (357 aa)    
Predicted Functional Partners:
CCL19
C-C motif chemokine 19.
   
 0.984
RLOC_00015097
C-C motif chemokine.
   
 0.874
LOC110475885
C-C motif chemokine.
   
 0.605
CXCL12
Stromal cell-derived factor 1; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.599
CYTL1
Cytokine-like protein 1.
      
 0.580
DHODH
Dihydroorotate dehydrogenase (quinone), mitochondrial; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
      
 0.539
SOX6
Transcription factor SOX-6.
      
 0.499
LOC110481878
C-C motif chemokine 5.
   
 0.479
PI16
Peptidase inhibitor 16; Belongs to the CRISP family.
      
 0.449
CMTM7
CKLF-like MARVEL transmembrane domain-containing protein 7.
      
 0.439
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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