STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZSWIM8Zinc finger SWIM domain-containing protein 8. (1822 aa)    
Predicted Functional Partners:
ECM1
Extracellular matrix protein 1.
      
 0.630
ELOB
Transcription elongation factor B polypeptide 2.
    
 0.551
OASL
2'-5'-oligoadenylate synthase-like protein 1.
     
 0.541
ELOC
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.540
CAAP1
Caspase activity and apoptosis inhibitor 1.
      
 0.523
MRPS14
28S ribosomal protein S14, mitochondrial.
      
 0.463
RBX1
E3 ubiquitin-protein ligase RBX1.
     
 0.450
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.