LRIG2 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LRIG2

Leucine rich repeats and immunoglobulin like domains 2. (977 aa)

Predicted Functional Partners:

LRIG1

0.857

HPSE2

0.692

TDRD3

0.687

MET

0.671

MST1R

0.671

KLHL31

0.600

BIRC6

0.596

ANKLE2

0.582

SHQ1

0.568

TMEM170A

0.565

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKLE2	LRIG2	ENSLSDP00000018471	ENSLSDP00000007873	Ankyrin repeat and LEM domain-containing protein 2.	Leucine rich repeats and immunoglobulin like domains 2.	0.582
ANKLE2	TMEM170A	ENSLSDP00000018471	ENSLSDP00000000878	Ankyrin repeat and LEM domain-containing protein 2.	Transmembrane protein 170A.	0.454
BIRC6	LRIG2	ENSLSDP00000004462	ENSLSDP00000007873	Baculoviral IAP repeat-containing protein 6.	Leucine rich repeats and immunoglobulin like domains 2.	0.596
BIRC6	TMEM170A	ENSLSDP00000004462	ENSLSDP00000000878	Baculoviral IAP repeat-containing protein 6.	Transmembrane protein 170A.	0.452
HPSE2	LRIG2	ENSLSDP00000007490	ENSLSDP00000007873	Inactive heparanase-2.	Leucine rich repeats and immunoglobulin like domains 2.	0.692
KLHL31	LRIG2	ENSLSDP00000000064	ENSLSDP00000007873	Kelch-like protein 31.	Leucine rich repeats and immunoglobulin like domains 2.	0.600
KLHL31	TDRD3	ENSLSDP00000000064	ENSLSDP00000018410	Kelch-like protein 31.	Tudor domain-containing protein 3.	0.598
LRIG1	LRIG2	ENSLSDP00000012335	ENSLSDP00000007873	Leucine-rich repeats and immunoglobulin-like domains protein 1.	Leucine rich repeats and immunoglobulin like domains 2.	0.857
LRIG1	MET	ENSLSDP00000012335	ENSLSDP00000023812	Leucine-rich repeats and immunoglobulin-like domains protein 1.	Hepatocyte growth factor receptor.	0.966
LRIG1	MST1R	ENSLSDP00000012335	ENSLSDP00000025391	Leucine-rich repeats and immunoglobulin-like domains protein 1.	Macrophage-stimulating protein receptor.	0.748
LRIG2	ANKLE2	ENSLSDP00000007873	ENSLSDP00000018471	Leucine rich repeats and immunoglobulin like domains 2.	Ankyrin repeat and LEM domain-containing protein 2.	0.582
LRIG2	BIRC6	ENSLSDP00000007873	ENSLSDP00000004462	Leucine rich repeats and immunoglobulin like domains 2.	Baculoviral IAP repeat-containing protein 6.	0.596
LRIG2	HPSE2	ENSLSDP00000007873	ENSLSDP00000007490	Leucine rich repeats and immunoglobulin like domains 2.	Inactive heparanase-2.	0.692
LRIG2	KLHL31	ENSLSDP00000007873	ENSLSDP00000000064	Leucine rich repeats and immunoglobulin like domains 2.	Kelch-like protein 31.	0.600
LRIG2	LRIG1	ENSLSDP00000007873	ENSLSDP00000012335	Leucine rich repeats and immunoglobulin like domains 2.	Leucine-rich repeats and immunoglobulin-like domains protein 1.	0.857
LRIG2	MET	ENSLSDP00000007873	ENSLSDP00000023812	Leucine rich repeats and immunoglobulin like domains 2.	Hepatocyte growth factor receptor.	0.671
LRIG2	MST1R	ENSLSDP00000007873	ENSLSDP00000025391	Leucine rich repeats and immunoglobulin like domains 2.	Macrophage-stimulating protein receptor.	0.671
LRIG2	SHQ1	ENSLSDP00000007873	ENSLSDP00000015196	Leucine rich repeats and immunoglobulin like domains 2.	Protein SHQ1.	0.568
LRIG2	TDRD3	ENSLSDP00000007873	ENSLSDP00000018410	Leucine rich repeats and immunoglobulin like domains 2.	Tudor domain-containing protein 3.	0.687
LRIG2	TMEM170A	ENSLSDP00000007873	ENSLSDP00000000878	Leucine rich repeats and immunoglobulin like domains 2.	Transmembrane protein 170A.	0.565