CHD5 protein (Lonchura striata) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

CHD5

Chromodomain-helicase-DNA-binding protein 5. (2049 aa)

Predicted Functional Partners:

RBBP4

0.779

RBBP7

0.771

ENSLSDP00000004218

0.730

MBD3

0.730

ARID4A

0.717

ARID4B

0.717

GATAD2B

0.712

GATAD2A

0.663

ENSLSDP00000011424

0.663

MTA2

0.658

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSLSDP00000016845	ENSLSDP00000023019	AT-rich interactive domain-containing protein 4A.	AT-rich interactive domain-containing protein 4B.	0.656
ARID4A	CHD5	ENSLSDP00000016845	ENSLSDP00000007902	AT-rich interactive domain-containing protein 4A.	Chromodomain-helicase-DNA-binding protein 5.	0.717
ARID4A	ENSLSDP00000004218	ENSLSDP00000016845	ENSLSDP00000004218	AT-rich interactive domain-containing protein 4A.	annotation not available	0.624
ARID4A	ENSLSDP00000011424	ENSLSDP00000016845	ENSLSDP00000011424	AT-rich interactive domain-containing protein 4A.	annotation not available	0.675
ARID4A	GATAD2A	ENSLSDP00000016845	ENSLSDP00000011414	AT-rich interactive domain-containing protein 4A.	Transcriptional repressor p66-alpha.	0.675
ARID4A	GATAD2B	ENSLSDP00000016845	ENSLSDP00000016389	AT-rich interactive domain-containing protein 4A.	Transcriptional repressor p66-beta.	0.675
ARID4A	MBD3	ENSLSDP00000016845	ENSLSDP00000005883	AT-rich interactive domain-containing protein 4A.	Methyl-CpG-binding domain protein 3.	0.624
ARID4A	MTA2	ENSLSDP00000016845	ENSLSDP00000008054	AT-rich interactive domain-containing protein 4A.	Metastasis associated 1 family member 2.	0.653
ARID4A	RBBP4	ENSLSDP00000016845	ENSLSDP00000006151	AT-rich interactive domain-containing protein 4A.	Histone-binding protein RBBP4.	0.989
ARID4A	RBBP7	ENSLSDP00000016845	ENSLSDP00000000959	AT-rich interactive domain-containing protein 4A.	Histone-binding protein RBBP7.	0.989
ARID4B	ARID4A	ENSLSDP00000023019	ENSLSDP00000016845	AT-rich interactive domain-containing protein 4B.	AT-rich interactive domain-containing protein 4A.	0.656
ARID4B	CHD5	ENSLSDP00000023019	ENSLSDP00000007902	AT-rich interactive domain-containing protein 4B.	Chromodomain-helicase-DNA-binding protein 5.	0.717
ARID4B	ENSLSDP00000004218	ENSLSDP00000023019	ENSLSDP00000004218	AT-rich interactive domain-containing protein 4B.	annotation not available	0.624
ARID4B	ENSLSDP00000011424	ENSLSDP00000023019	ENSLSDP00000011424	AT-rich interactive domain-containing protein 4B.	annotation not available	0.675
ARID4B	GATAD2A	ENSLSDP00000023019	ENSLSDP00000011414	AT-rich interactive domain-containing protein 4B.	Transcriptional repressor p66-alpha.	0.675
ARID4B	GATAD2B	ENSLSDP00000023019	ENSLSDP00000016389	AT-rich interactive domain-containing protein 4B.	Transcriptional repressor p66-beta.	0.676
ARID4B	MBD3	ENSLSDP00000023019	ENSLSDP00000005883	AT-rich interactive domain-containing protein 4B.	Methyl-CpG-binding domain protein 3.	0.624
ARID4B	MTA2	ENSLSDP00000023019	ENSLSDP00000008054	AT-rich interactive domain-containing protein 4B.	Metastasis associated 1 family member 2.	0.660
ARID4B	RBBP4	ENSLSDP00000023019	ENSLSDP00000006151	AT-rich interactive domain-containing protein 4B.	Histone-binding protein RBBP4.	0.989
ARID4B	RBBP7	ENSLSDP00000023019	ENSLSDP00000000959	AT-rich interactive domain-containing protein 4B.	Histone-binding protein RBBP7.	0.989