STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MARCHF11E3 ubiquitin-protein ligase MARCH11. (412 aa)    
Predicted Functional Partners:
CNOT2
CCR4-NOT transcription complex subunit 2.
    
 
 0.607
RAVER2
Ribonucleoprotein PTB-binding 2.
      
 0.535
MARCHF7
E3 ubiquitin-protein ligase MARCH7.
      
0.526
FAF1
FAS-associated factor 1.
    
 
 0.457
FAF2
FAS-associated factor 2.
    
 
 0.457
VCP
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 
 0.421
SPATA5
Spermatogenesis-associated protein 5.
    
 
 0.421
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1.
    
 
 0.421
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.