Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC110471057C-C chemokine receptor type 5; Belongs to the G-protein coupled receptor 1 family. (356 aa)    
Predicted Functional Partners:
LOC110475885
C-C motif chemokine.
   
 0.996
LOC110475883
C-C motif chemokine 4.
   
 0.987
CD4
T-cell surface glycoprotein CD4.
   
 
 0.955
LOC110471058
C-C chemokine receptor type 1-like.
  
 
0.951
LOC110475884
C-C motif chemokine 4 homolog.
    
 0.946
LOC110476305
SCY domain-containing protein.
    
 0.874
CXCR4
C-X-C chemokine receptor type 4; Belongs to the G-protein coupled receptor 1 family.
    
 0.833
ARRB1
Beta-arrestin-1.
    
 0.794
LOC110477408
L-gulonolactone oxidase-like.
      
 0.790
CXCL12
Stromal cell-derived factor 1; Belongs to the intercrine alpha (chemokine CxC) family.
    
 0.747
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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