Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM118AProtein FAM118A. (355 aa)    
Predicted Functional Partners:
WDR4
tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.
    
   0.839
THUMPD2
THUMP domain-containing protein 2.
      
 0.829
DNAJC18
DnaJ subfamily C member 18.
    
 
 0.810
TTC38
Tetratricopeptide repeat protein 38.
      
 0.690
ZNF512B
Zinc finger protein 512B.
   
 0.690
PLD6
Mitochondrial cardiolipin hydrolase.
    
 0.687
GPAT2
Glycerol-3-phosphate acyltransferase 2, mitochondrial.
      
 0.671
TNFSF13B
Tumor necrosis factor ligand superfamily member 13B; Belongs to the tumor necrosis factor family.
    
  0.639
BBS9
Protein PTHB1.
    
 0.628
REEP6
Receptor expression-enhancing protein.
    
 
 0.605
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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