STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110471814Ras-related protein Rab-18-B. (178 aa)    
Predicted Functional Partners:
RAB3GAP1
Rab3 GTPase-activating protein catalytic subunit.
    
 0.784
ENSLSDP00000014727
annotation not available
     
 0.695
RAB3GAP2
Rab3 GTPase-activating protein non-catalytic subunit.
     
 0.695
LOC110471134
Rab proteins geranylgeranyltransferase component A 2.
     
 0.644
RABGGTB
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
     
 0.642
ACTR10
Actin-related protein 10; Belongs to the actin family.
   
 
 0.594
DCTN6
Dynactin subunit 6.
     
 0.592
DCTN4
Dynactin subunit 4.
   
 
  0.587
RABGGTA
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.581
ACTR1A
Alpha-centractin; Belongs to the actin family.
     
 0.577
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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