Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SUPT3HTranscription initiation protein SPT3. (377 aa)    
Predicted Functional Partners:
SUPT7L
STAGA complex 65 subunit gamma.
    
 0.989
TADA3
Transcriptional adapter 3.
    
 0.988
TADA2B
Transcriptional adapter.
    
 0.988
TRRAP
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
    
 0.987
SGF29
SAGA-associated factor 29.
    
 0.987
TAF12
Transcription initiation factor TFIID subunit 12.
   
 0.987
ATXN7L3
Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.
    
 0.986
SUPT20H
Transcription factor SPT20.
    
 0.985
TAF6L
TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor subunit 6L.
    
 0.984
TAF10
Transcription initiation factor TFIID subunit 10.
    
 0.984
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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