DPF2 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DPF2

Zinc finger protein ubi-d4. (405 aa)

Predicted Functional Partners:

SMARCB1

0.915

ARID1B

0.893

ARID1A

0.893

SMARCE1

0.884

BCL7A

0.819

SMARCD2

0.816

PBRM1

0.790

ARID2

0.788

BRD7

0.783

SMARCC1

0.724

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID1A	ARID1B	ENSLSDP00000023644	ENSLSDP00000021920	AT-rich interactive domain-containing protein 1A.	AT-rich interactive domain-containing protein 1B.	0.900
ARID1A	ARID2	ENSLSDP00000023644	ENSLSDP00000022749	AT-rich interactive domain-containing protein 1A.	AT-rich interactive domain-containing protein 2.	0.815
ARID1A	BCL7A	ENSLSDP00000023644	ENSLSDP00000006294	AT-rich interactive domain-containing protein 1A.	B-cell CLL/lymphoma 7 protein family member A.	0.876
ARID1A	BRD7	ENSLSDP00000023644	ENSLSDP00000011728	AT-rich interactive domain-containing protein 1A.	Bromodomain-containing protein 7.	0.578
ARID1A	DPF2	ENSLSDP00000023644	ENSLSDP00000008167	AT-rich interactive domain-containing protein 1A.	Zinc finger protein ubi-d4.	0.893
ARID1A	PBRM1	ENSLSDP00000023644	ENSLSDP00000018152	AT-rich interactive domain-containing protein 1A.	Protein polybromo-1.	0.922
ARID1A	SMARCB1	ENSLSDP00000023644	ENSLSDP00000012385	AT-rich interactive domain-containing protein 1A.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.946
ARID1A	SMARCC1	ENSLSDP00000023644	ENSLSDP00000017538	AT-rich interactive domain-containing protein 1A.	SWI/SNF complex subunit SMARCC1.	0.913
ARID1A	SMARCD2	ENSLSDP00000023644	ENSLSDP00000004332	AT-rich interactive domain-containing protein 1A.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2.	0.877
ARID1A	SMARCE1	ENSLSDP00000023644	ENSLSDP00000010005	AT-rich interactive domain-containing protein 1A.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1.	0.966
ARID1B	ARID1A	ENSLSDP00000021920	ENSLSDP00000023644	AT-rich interactive domain-containing protein 1B.	AT-rich interactive domain-containing protein 1A.	0.900
ARID1B	ARID2	ENSLSDP00000021920	ENSLSDP00000022749	AT-rich interactive domain-containing protein 1B.	AT-rich interactive domain-containing protein 2.	0.815
ARID1B	BCL7A	ENSLSDP00000021920	ENSLSDP00000006294	AT-rich interactive domain-containing protein 1B.	B-cell CLL/lymphoma 7 protein family member A.	0.876
ARID1B	BRD7	ENSLSDP00000021920	ENSLSDP00000011728	AT-rich interactive domain-containing protein 1B.	Bromodomain-containing protein 7.	0.620
ARID1B	DPF2	ENSLSDP00000021920	ENSLSDP00000008167	AT-rich interactive domain-containing protein 1B.	Zinc finger protein ubi-d4.	0.893
ARID1B	PBRM1	ENSLSDP00000021920	ENSLSDP00000018152	AT-rich interactive domain-containing protein 1B.	Protein polybromo-1.	0.925
ARID1B	SMARCB1	ENSLSDP00000021920	ENSLSDP00000012385	AT-rich interactive domain-containing protein 1B.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.	0.946
ARID1B	SMARCC1	ENSLSDP00000021920	ENSLSDP00000017538	AT-rich interactive domain-containing protein 1B.	SWI/SNF complex subunit SMARCC1.	0.913
ARID1B	SMARCD2	ENSLSDP00000021920	ENSLSDP00000004332	AT-rich interactive domain-containing protein 1B.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2.	0.877
ARID1B	SMARCE1	ENSLSDP00000021920	ENSLSDP00000010005	AT-rich interactive domain-containing protein 1B.	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1.	0.966