STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKDREJPolycystic kidney disease and receptor for egg jelly-related protein. (136 aa)    
Predicted Functional Partners:
PKD2L1
Polycystic kidney disease 2-like 1 protein.
    
 0.750
PKD2
Polycystin-2.
    
 0.750
MYOT
Myotilin.
    
 0.631
RTF2
Protein RTF2.
   
  
 0.618
SEC63
Translocation protein SEC63.
    
 
 0.538
EXOC5
Exocyst complex component 5.
     
 0.521
TRPM2
Transient receptor potential cation channel subfamily M member 2.
      
 0.516
ODF2L
Outer dense fiber protein 2-like.
    
 
 0.506
SPERT
Spermatid-associated protein.
    
 
 0.461
CDPF1
Cysteine rich DPF motif domain containing 1.
      
 0.457
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.