STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YTHDF1YTH domain-containing family protein 1. (561 aa)    
Predicted Functional Partners:
METTL14
N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.
  
   
 0.744
WTAP
Pre-mRNA-splicing regulator WTAP.
   
  
 0.677
ALKBH5
RNA demethylase ALKBH5.
      
 0.659
ZFC3H1
Zinc finger C3H1 domain-containing protein.
    
 
 0.639
EEF2
Elongation factor 2.
      
 0.613
EIF3B
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
  
 0.589
METTL3
N6-adenosine-methyltransferase subunit; Belongs to the MT-A70-like family.
      
 0.585
HNRNPC
Heterogeneous nuclear ribonucleoprotein C-like 1.
    
 
 0.585
FTO
Alpha-ketoglutarate-dependent dioxygenase FTO.
      
 0.578
HNRNPA2B1
Heterogeneous nuclear ribonucleoproteins A2/B1.
    
 
 0.576
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.