STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX42ATP-dependent RNA helicase DDX42. (897 aa)    
Predicted Functional Partners:
SF3B1
Splicing factor 3B subunit 1.
   
 0.999
SF3B3
Splicing factor 3B subunit 3.
   
 0.998
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.994
PHF5A
PHD finger-like domain-containing protein 5A.
    
 0.993
SF3B6
Splicing factor 3B subunit 6.
    
  0.986
SF3A2
Splicing factor 3A subunit 2.
    
 0.942
SF3B4
Splicing factor 3B subunit 4.
    
 0.934
SF3B2
Splicing factor 3B subunit 2.
   
 0.920
DHX15
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.868
ZMAT5
Zinc finger matrin-type protein 5.
    
 0.825
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.