Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
UPK1BUroplakin-1b; Belongs to the tetraspanin (TM4SF) family. (247 aa)    
Predicted Functional Partners:
UPK3B
Uroplakin-3b.
   
  
 0.850
GPM6A
Neuronal membrane glycoprotein M6-a.
   
  
 0.702
MAATS1
Protein MAATS1.
     
 0.579
TFAP2C
Transcription factor AP-2 gamma.
      
 0.566
PRR15
Proline-rich protein 15.
      
 0.562
WWC2
Protein WWC2.
      
 0.452
CD37
Tetraspanin.
      
 0.450
KRT20
Keratin, type I cytoskeletal 12; Belongs to the intermediate filament family.
      
 0.434
DDX23
Putative ATP-dependent RNA helicase DDX23.
      
 0.415
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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