CCDC47 protein (Lonchura striata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CCDC47

Coiled-coil domain-containing protein 47. (482 aa)

Predicted Functional Partners:

TMCO1

0.931

ENSLSDP00000003801

0.912

NCLN

0.909

WDR83OS

0.878

RPL32

0.838

SEC61B

0.837

SEC61A2

0.818

SEC61A1

0.818

EMC2

0.804

RPL8

0.785

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC47	EMC2	ENSLSDP00000008315	ENSLSDP00000005794	Coiled-coil domain-containing protein 47.	ER membrane protein complex subunit 2.	0.804
CCDC47	ENSLSDP00000003801	ENSLSDP00000008315	ENSLSDP00000003801	Coiled-coil domain-containing protein 47.	annotation not available	0.912
CCDC47	NCLN	ENSLSDP00000008315	ENSLSDP00000013261	Coiled-coil domain-containing protein 47.	Nicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning.	0.909
CCDC47	RPL32	ENSLSDP00000008315	ENSLSDP00000023454	Coiled-coil domain-containing protein 47.	Large subunit ribosomal protein L32e.	0.838
CCDC47	RPL8	ENSLSDP00000008315	ENSLSDP00000017950	Coiled-coil domain-containing protein 47.	60S ribosomal protein L8.	0.785
CCDC47	SEC61A1	ENSLSDP00000008315	ENSLSDP00000013663	Coiled-coil domain-containing protein 47.	Protein transport protein Sec61 subunit alpha isoform 1.	0.818
CCDC47	SEC61A2	ENSLSDP00000008315	ENSLSDP00000004770	Coiled-coil domain-containing protein 47.	Protein transport protein Sec61 subunit alpha isoform 2.	0.818
CCDC47	SEC61B	ENSLSDP00000008315	ENSLSDP00000024187	Coiled-coil domain-containing protein 47.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.837
CCDC47	TMCO1	ENSLSDP00000008315	ENSLSDP00000013213	Coiled-coil domain-containing protein 47.	Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.	0.931
CCDC47	WDR83OS	ENSLSDP00000008315	ENSLSDP00000011553	Coiled-coil domain-containing protein 47.	Protein Asterix.	0.878
EMC2	CCDC47	ENSLSDP00000005794	ENSLSDP00000008315	ER membrane protein complex subunit 2.	Coiled-coil domain-containing protein 47.	0.804
EMC2	ENSLSDP00000003801	ENSLSDP00000005794	ENSLSDP00000003801	ER membrane protein complex subunit 2.	annotation not available	0.645
EMC2	NCLN	ENSLSDP00000005794	ENSLSDP00000013261	ER membrane protein complex subunit 2.	Nicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning.	0.635
EMC2	RPL8	ENSLSDP00000005794	ENSLSDP00000017950	ER membrane protein complex subunit 2.	60S ribosomal protein L8.	0.469
ENSLSDP00000003801	CCDC47	ENSLSDP00000003801	ENSLSDP00000008315	annotation not available	Coiled-coil domain-containing protein 47.	0.912
ENSLSDP00000003801	EMC2	ENSLSDP00000003801	ENSLSDP00000005794	annotation not available	ER membrane protein complex subunit 2.	0.645
ENSLSDP00000003801	NCLN	ENSLSDP00000003801	ENSLSDP00000013261	annotation not available	Nicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning.	0.979
ENSLSDP00000003801	RPL32	ENSLSDP00000003801	ENSLSDP00000023454	annotation not available	Large subunit ribosomal protein L32e.	0.579
ENSLSDP00000003801	RPL8	ENSLSDP00000003801	ENSLSDP00000017950	annotation not available	60S ribosomal protein L8.	0.752
ENSLSDP00000003801	SEC61A1	ENSLSDP00000003801	ENSLSDP00000013663	annotation not available	Protein transport protein Sec61 subunit alpha isoform 1.	0.695