Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC110482648Barrier-to-autointegration factor. (90 aa)    
Predicted Functional Partners:
VRK1
Serine/threonine-protein kinase VRK1; Belongs to the protein kinase superfamily.
    
 0.841
LEMD3
Inner nuclear membrane protein Man1.
    
 0.841
VRK2
Serine/threonine-protein kinase VRK2.
    
 0.817
TMPO
Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma.
    
 0.804
ANKLE2
Ankyrin repeat and LEM domain-containing protein 2.
    
 0.786
LMNB1
Lamin-B1; Belongs to the intermediate filament family.
    
 0.727
LMNB2
Lamin-B2; Belongs to the intermediate filament family.
    
 0.727
LMNA
Lamin-A; Belongs to the intermediate filament family.
    
 0.727
RBM23
Putative RNA-binding protein 23.
    
 0.669
RBM39
RNA-binding protein 39.
    
 0.669
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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