Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
STRA6Stimulated by retinoic acid 6. (559 aa)    
Predicted Functional Partners:
RBP4
Retinol-binding protein 4; Belongs to the calycin superfamily. Lipocalin family.
     
 0.969
LOC110468128
Transthyretin.
     
 0.727
LOC110468129
Transthyretin.
     
 0.723
LOC110475813
Cytochrome P450 26A1; Belongs to the cytochrome P450 family.
    
 0.681
RDH10
Retinol dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.600
CYP26B1
Cytochrome P450 26B1; Belongs to the cytochrome P450 family.
    
 0.596
RARS1
Arginine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
 
 0.571
LRAT
Lecithin retinol acyltransferase.
      
 0.564
EPHA1
Ephrin type-A receptor 1.
    
 0.541
CNGA3
Cyclic nucleotide-gated channel cone photoreceptor subunit alpha.
      
 0.523
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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