Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CHD1LChromodomain-helicase-DNA-binding protein 1-like. (888 aa)    
Predicted Functional Partners:
PARP1
Poly [ADP-ribose] polymerase.
    
 0.979
APLF
Aprataxin and PNK-like factor.
    
 
 0.932
RNF146
E3 ubiquitin-protein ligase RNF146.
    
 
 0.922
XPA
DNA repair protein complementing XP-A cells.
    
 0.919
XPC
DNA repair protein complementing XP-C cells.
   
 0.918
XRCC6
X-ray repair cross-complementing protein 5.
   
 
 0.917
SUPT16H
FACT complex subunit SPT16.
   
 
 0.885
PRKAB2
5'-AMP-activated protein kinase subunit beta-2.
    
 
 0.875
POLE3
DNA polymerase epsilon subunit 3.
    
 0.854
NUDCD1
NudC domain-containing protein 1.
    
   0.785
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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