Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DOCK4Dedicator of cytokinesis protein 4; Belongs to the DOCK family. (2036 aa)    
Predicted Functional Partners:
ENSLSDP00000008068
annotation not available
   
 0.995
RPL6
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
   
 0.982
RPL21
60S ribosomal protein L21.
   
 0.979
RPL19
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.979
RPL14
60S ribosomal protein L14.
   
 0.979
RPL32
Large subunit ribosomal protein L32e.
   
 0.979
RPLP0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
  
 0.977
LOC110478718
60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
  
 0.977
RPL24
60S ribosomal protein L24.
  
 0.977
RPL5
60S ribosomal protein L5.
  
 0.977
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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