Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC110480699Cytochrome c oxidase copper chaperone. (67 aa)    
Predicted Functional Partners:
CHCHD4
Mitochondrial intermembrane space import and assembly protein 40.
   
 0.951
COX11
Cytochrome c oxidase assembly protein COX11, mitochondrial.
   
 
 0.941
LOC110475502
Cytochrome c oxidase assembly protein COX19.
     
 0.932
ATOX1
Copper transport protein ATOX1.
   
 
 0.908
LOC110474919
Protein SCO1, mitochondrial.
   
 0.887
SCO2
Protein SCO2, mitochondrial.
   
 0.887
CCS
Copper chaperone for superoxide dismutase.
     
 0.877
LOC110479399
Cytochrome c oxidase assembly factor 5.
   
 
 0.875
SCYL2
SCY1-like protein 2.
    
   0.851
PUM1
Pumilio 1.
    
 
 0.824
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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