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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC110480699Cytochrome c oxidase copper chaperone. (67 aa)    
Predicted Functional Partners:
CHCHD4
Mitochondrial intermembrane space import and assembly protein 40.
   
 0.965
PUM1
Pumilio 1.
    
 
 0.757
PUM2
Pumilio 2.
    
 
 0.757
GFER
Sulfhydryl oxidase.
   
 0.744
LOC110479399
Cytochrome c oxidase assembly factor 5.
   
  
 0.742
TIMM10
Mitochondrial import inner membrane translocase subunit Tim10.
   
 
 0.739
ENSLSDP00000000472
annotation not available
   
  
 0.703
TIMM8A
Mitochondrial import inner membrane translocase subunit Tim8 A; Belongs to the small Tim family.
   
 
 0.701
ATOX1
Copper transport protein ATOX1.
   
 
 0.691
COX11
Cytochrome c oxidase assembly protein COX11, mitochondrial.
   
  
 0.683
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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