Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SOX18Transcription factor Sox-18A. (417 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1.
    
 0.829
LOC110472216
POU domain protein.
    
 0.744
LOC110472349
Homeobox protein NANOG.
    
 0.723
TFAP2C
Transcription factor AP-2 gamma.
   
 0.722
PRDM1
PR domain zinc finger protein 1.
    
 0.718
MIXL1
Mix paired-like homeobox.
    
 0.711
GATA6
Transcription factor GATA-6.
   
 0.630
CXCR4
C-X-C chemokine receptor type 4; Belongs to the G-protein coupled receptor 1 family.
   
 
 0.628
EOMES
Eomesodermin.
    
 0.621
LEF1
Lymphoid enhancer-binding factor 1.
    
 0.608
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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