STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOX18Transcription factor Sox-18A. (417 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1.
    
 0.630
LOC110472216
POU domain protein.
    
 0.594
LEF1
Lymphoid enhancer-binding factor 1.
    
0.591
LOC110472349
Homeobox protein NANOG.
    
 0.511
JUP
Junction plakoglobin.
    
 0.509
GATA6
Transcription factor GATA-6.
   
 0.504
TCF7L1
Transcription factor 7-like 1.
    
 0.460
TCF7L2
Transcription factor 7-like 2.
    
0.460
LEF1_0
Lymphoid enhancer-binding factor 1.
    
0.447
ENSLSDP00000010194
annotation not available
    
 0.447
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.