STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF6Pre-mRNA-processing factor 6. (941 aa)    
Predicted Functional Partners:
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.999
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.999
SNRNP40
U5 small nuclear ribonucleoprotein.
   
 0.998
DDX23
Putative ATP-dependent RNA helicase DDX23.
   
 0.996
SNRPD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.996
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.995
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.994
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.994
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.993
SF3B1
Splicing factor 3B subunit 1.
   
 0.992
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.