Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF6Pre-mRNA-processing factor 6. (941 aa)    
Predicted Functional Partners:
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.999
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.999
DDX23
Putative ATP-dependent RNA helicase DDX23.
   
 0.997
SNRNP40
U5 small nuclear ribonucleoprotein.
   
 0.997
PRPF3
U4/U6 small nuclear ribonucleoprotein Prp3.
   
 0.997
PRPF4
U4/U6 small nuclear ribonucleoprotein Prp4.
   
 0.996
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
   
 0.994
ZMAT2
Zinc finger matrin-type protein 2.
   
 0.981
SNRNP200
U5 small nuclear ribonucleoprotein helicase.
   
 0.979
ENSLSDP00000010709
annotation not available
   
 0.979
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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