Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
HGDHomogentisate 1,2-dioxygenase. (439 aa)    
Predicted Functional Partners:
HPD
4-hydroxyphenylpyruvate dioxygenase.
  
 0.998
GSTZ1
Maleylacetoacetate isomerase; Belongs to the GST superfamily.
 
 
 0.996
HPDL
4-hydroxyphenylpyruvate dioxygenase-like protein.
  
 0.958
HPS4
Hermansky-Pudlak syndrome 4.
  
 0.909
ENSLSDP00000017438
annotation not available
  
 0.909
FAH
Fumarylacetoacetase.
  
 
 0.870
PAH
Phenylalanine-4-hydroxylase.
  
  
 0.830
F13B
Abnormal spindle-like microcephaly-associated.
   
  
 0.822
TAT
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
   
  
 0.754
AGXT2
Alanine--glyoxylate aminotransferase 2, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
   
  
 0.720
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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