Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC110471824Alanyl-tRNA editing protein Aarsd1. (460 aa)    
Predicted Functional Partners:
MVD
Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes.
    
   0.717
ENSLSDP00000007667
annotation not available
    
   0.717
PTGES3L
CS domain-containing protein.
 
 
    0.712
ERI2
ERI1 exoribonuclease 2.
    
   0.548
EXOC1
Exocyst complex component 1.
      
 0.547
YARS1
Tyrosine--tRNA ligase.
      
 0.544
PPM1E
Protein phosphatase 1E.
      
 0.534
EPRS1
Bifunctional glutamate/proline--tRNA ligase.
     
 0.504
EARS2
Putative glutamate--tRNA ligase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.474
GTPBP1
GTP-binding protein 1.
      
 0.460
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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