Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FOXJ1Forkhead box protein J1. (430 aa)    
Predicted Functional Partners:
FOXN4
Forkhead box protein N4.
   
  
 0.929
FOXN1
Forkhead box protein N1.
   
  
 0.926
SFTPC
LOW QUALITY PROTEIN: pulmonary surfactant-associated protein C.
      
 0.854
RFX2
DNA-binding protein RFX2.
    
 
 0.814
RFX3
Transcription factor RFX3.
    
 
 0.814
SNTN
Sentan.
   
  
 0.706
TBC1D32
Protein broad-minded.
    
 
 0.690
LCMT1
Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.
      
 0.681
FOXG1
Forkhead box protein G1.
   
  
 0.644
TCF7L1
Transcription factor 7-like 1.
    
 0.623
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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