Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB3GAP1Rab3 GTPase-activating protein catalytic subunit. (962 aa)    
Predicted Functional Partners:
ENSLSDP00000014727
annotation not available
   
 0.990
RAB3GAP2
Rab3 GTPase-activating protein non-catalytic subunit.
   
 0.990
DMXL2
DmX-like protein 2.
   
 
 0.884
VAPB
Vesicle-associated membrane protein-associated protein B.
    
 
 0.848
TBC1D20
TBC1 domain family member 20.
      
 0.838
RAB18
Ras-related protein Rab-18.
    
 0.790
LOC110471814
Ras-related protein Rab-18-B.
    
 0.790
DMXL1
DmX-like protein 1.
   
 
 0.748
VAPA
Vesicle-associated membrane protein-associated protein A.
    
 
 0.745
LOC110471134
Rab proteins geranylgeranyltransferase component A 2.
   
 
 0.730
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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