ENSLSDP00000008746 protein (Lonchura striata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSLSDP00000008746

annotation not available (80 aa)

Predicted Functional Partners:

IMMP2L

0.898

SPCS2

0.786

SPCS1

0.769

SPCS3

0.763

ALDH18A1

0.702

ENSLSDP00000007557

0.685

DEPDC5

0.621

WDR24

0.590

WDR59

0.584

NPRL2

0.550

Your Current Organism:

Lonchura striata

NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH18A1	ENSLSDP00000008746	ENSLSDP00000020163	ENSLSDP00000008746	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	annotation not available	0.702
ALDH18A1	IMMP2L	ENSLSDP00000020163	ENSLSDP00000008758	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Mitochondrial inner membrane protease subunit 2.	0.702
DEPDC5	ENSLSDP00000007557	ENSLSDP00000000710	ENSLSDP00000007557	DEP domain-containing protein 5.	annotation not available	0.977
DEPDC5	ENSLSDP00000008746	ENSLSDP00000000710	ENSLSDP00000008746	DEP domain-containing protein 5.	annotation not available	0.621
DEPDC5	IMMP2L	ENSLSDP00000000710	ENSLSDP00000008758	DEP domain-containing protein 5.	Mitochondrial inner membrane protease subunit 2.	0.621
DEPDC5	NPRL2	ENSLSDP00000000710	ENSLSDP00000025084	DEP domain-containing protein 5.	Nitrogen permease regulator 2-like protein.	0.999
DEPDC5	WDR24	ENSLSDP00000000710	ENSLSDP00000002732	DEP domain-containing protein 5.	WD repeat-containing protein 24.	0.999
DEPDC5	WDR59	ENSLSDP00000000710	ENSLSDP00000021979	DEP domain-containing protein 5.	WD repeat-containing protein 59.	0.999
ENSLSDP00000007557	DEPDC5	ENSLSDP00000007557	ENSLSDP00000000710	annotation not available	DEP domain-containing protein 5.	0.977
ENSLSDP00000007557	ENSLSDP00000008746	ENSLSDP00000007557	ENSLSDP00000008746	annotation not available	annotation not available	0.685
ENSLSDP00000007557	IMMP2L	ENSLSDP00000007557	ENSLSDP00000008758	annotation not available	Mitochondrial inner membrane protease subunit 2.	0.685
ENSLSDP00000007557	NPRL2	ENSLSDP00000007557	ENSLSDP00000025084	annotation not available	Nitrogen permease regulator 2-like protein.	0.980
ENSLSDP00000007557	WDR24	ENSLSDP00000007557	ENSLSDP00000002732	annotation not available	WD repeat-containing protein 24.	0.975
ENSLSDP00000007557	WDR59	ENSLSDP00000007557	ENSLSDP00000021979	annotation not available	WD repeat-containing protein 59.	0.970
ENSLSDP00000008746	ALDH18A1	ENSLSDP00000008746	ENSLSDP00000020163	annotation not available	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.702
ENSLSDP00000008746	DEPDC5	ENSLSDP00000008746	ENSLSDP00000000710	annotation not available	DEP domain-containing protein 5.	0.621
ENSLSDP00000008746	ENSLSDP00000007557	ENSLSDP00000008746	ENSLSDP00000007557	annotation not available	annotation not available	0.685
ENSLSDP00000008746	IMMP2L	ENSLSDP00000008746	ENSLSDP00000008758	annotation not available	Mitochondrial inner membrane protease subunit 2.	0.898
ENSLSDP00000008746	NPRL2	ENSLSDP00000008746	ENSLSDP00000025084	annotation not available	Nitrogen permease regulator 2-like protein.	0.550
ENSLSDP00000008746	SPCS1	ENSLSDP00000008746	ENSLSDP00000018207	annotation not available	Signal peptidase complex subunit 1.	0.769