STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HECTD4Putative E3 ubiquitin-protein ligase HECTD4. (4426 aa)    
Predicted Functional Partners:
EVC
Ellis-van Creveld syndrome.
   
 0.665
GGA3
ADP-ribosylation factor-binding protein GGA3.
    
 
 0.644
ZFAND4
AN1-type zinc finger protein 4.
    
 0.566
SLC17A5
Sialin.
    
 
 0.556
LOC110478774
E3 SUMO-protein ligase RanBP2.
   
 0.543
MT-ND4
Mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 4.
    
 
 0.535
TOM1
Target of Myb protein 1; Belongs to the TOM1 family.
    
 
 0.514
RABGEF1
Rab5 GDP/GTP exchange factor.
    
 0.455
NUP85
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
     
 0.435
DPH3
DPH3.
    
 
 0.428
Your Current Organism:
Lonchura striata
NCBI taxonomy Id: 299123
Other names: Bengalese finch, L. striata domestica, Lonchura domestica, Lonchura striata domestica, society finch
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.